longshot hazelnut violation of aurora snow verizon wireless music center dia de los muertos xanax valium modeling photo contests pa.lottery saskatoons glass core drill bits enaction richedit controls graduation party planning hawaiian telcom hayward carpet cleaning nereydah ottertail minn luminox titanium watch bands school shooting public speakers reverse osmosis water filters custom design triquint semi simms furniture store wisconsin sawmills christine walker lubus world passwords technic beat ps2 johnson space center federal credit union honda motorcycle accessory visivite mls listing california anal induced orgasm vampirella model kit http school of veterinary medicine university of california davis http map high protein diet cut worms telewest communications domain oswego park district sick sites ohio high school football coach karmina palace manzanillo reviews silver dollar city tickets agente de en mexico viajes http map security labels eminem criminal phil cooke pictures newport news clothing sports illastrated enterprise woodfinishing aphrodisiacs london edan concerts webmap boy penis size chart los angeles personal injury lawyer optical character recognition franklin half dollars sandia heights homes new mexico lohan hot pics personalized keychains edgar archives northwest airline looses wheel tobago bo diddley knights tetti fotovoltaici map summerfield suite morristown second mortgage loan baptism clothes aluminized carbon kevlar 96.3 big earl cheap web hosting mayra margot fonteyn audioslave your time has come purple olf blog whats left in the army reserve rocky horror websters dictionary online homes for sale central ohio max lucado uk girls www.bellsouth.com nero error log st pete college amc24 willowbrook picking stranger up habbo cheats chalino sanchez lifestyle and secondary aging security door woodbridge home for sale laura prepon sexy free internet phone calls jennifer formica used filing cabinets ceneval graw mc phil i 485 filing pilot program taunton press eczema sensormatic detacher cheap golf balls house wiring gyno page dive gear online lg vx8100 hacking klinefelter syndrome civil war toy soldiers bar-stools dale hollow lake vacation packages lake tahoe home ex wife revenge pics a free dating service state of insanity weight loss information guys locker room erection all access tour madison square garden garden ridge pottery jerry clower 69 boyz srag older women getting fucked chat room australia victorian female nudity work at home assembly childrens martial arts classes page lowepro bag automatic cattle feeder men speedo inspector morses name smsu 1999 corolla review storage public whistler accomadations www.spiritair.com body modification 5 card draw poker hands eagle tatoo remain in my heart ficher banque internet banking privacy wilbanks self anal masturbation violet things to do in portland maine the prioress tale fruit fly euro us dollar exchange rates lake county fair ginger bread man motel bridgeport ct page slovenia property to buy purple carrot seed shellie serrat hotcars kryptonite pictures manolo cardona pc banking president choice lanebryant buy magic the gathering cards softice download couples lovemaking the mo lyric eagle lsvtec jacuzzi sand filter system loaded magazine uk royal copenhagen dishes myrtles plantation nikki bird holiday inn orlando acme mapper neurotic depression leupold binoculars exotic men dancewear store understanding military time nikki ziering gallery holla back tall ships newcastle 2005 domain wtc survivor pharmacy orlando real music ringtones encyclopedia of greek gods us news and executive mba and ranking 602pc suite keygen mcmenamins sheer curtains debra wilson mather fucker very long nipples free galleries
- 1 Species
- For the latest ideas, and to make comments, please see species-brainstorming.
- Note: the original name of the proposed microformat, "species", is likely to change, probably to "biota" or "taxon". The former has been retained here, to avoid having to make many repetitive and perhaps redundant edits
People use the vernacular AND taxonomic names of species in everyday speech and writing - just read or watch any populist gardening magazine or television programme.
- Consider this list: "Blackbird", "poodle", "T Rex", "potato", "French Marigold", "Wisteria", "E. Coli", "HIV", "Rubella" and "human being".
- "T Rex" is "Tyrannosaurus rex"; "E. Coli" is "Escherichia coli"; "HIV" is "Human immunodeficiency virus" and "Rubella" is "Rubella virus". All are the taxonomic (or scientific) names of unique species.
- "Wisteria" is a taxonomic genus.
- "Blackbird"; "poodle"; "potato"; "French Marigold" and "human being" (arguments about Neanderthals not withstanding) are vernacular (or common) names, but still refer to individual species.
- The scientific naming of organisms is a part of biodiversity informatics - "the application of information technology to the domain of biodiversity".
- The proposal aligns with E.O Wilson's wish:
...that we will work together to help create the key tool that we need to inspire preservation of Earth's biodiversity: the Encyclopedia of Life [...] an encyclopedia that lives on the Internet, with an ever-evolving page for every species [and which] does not duplicate existing efforts, but instead incorporates them through linking [with a] search technology that can aggregate existing biological information and make it easily accessible.
- As long ago as April 1998 on Robert Rothenburg's paper on Dictionaries (Note 4) said:
What is missing [from HTML] is an element for marking up "proper names" (names of people, geographic locations, institutions, or even scientific names such as genus/species).
- It's interesting that microformats have given us the first three missing items - and we're now debating the fourth!
Imagine viewing a web page with a reference to a species - and being able to use an add-on to you browser to be taken directly to information about that species, on, say, Wikipedia, or Wikispecies, or Google Images, or another site, such as in an academic database, of your choosing.
Your software would automatically know to search site A if the scientific name referred to a moth, site B for a bird, and site C for a plant - and you could set your preferences as to which sites those were to be, and in which order two or more were to be searched (e.g. for moths, try UK Moths first, if not found try The Global Lepidoptera Names Index).
Or supposing someone writes a long, chronologically-ordered web page about all the birds, insects, mammals and plants they saw on a wildlife safari, with lots of prose description about the paces where they saw them and the people they were with, but you want to extract a list of species, sorted into alphabetical order within taxonomic class (birds first, then insects then...) or in taxonomic order.
Those are just two of the things a "species" microformat might do for you.
Your software, or a search engine, would be able to differentiate between a pages discussing HMS Beagle, the ship, and a Beagle dog; or birds that fly as opposed to a slang term for women.
Another benefit would be that user-agents could be instructed to treat text marked up in this way as not being in the base language of the document or element in which they occur - pronunciation should be as for Latin, they should not be translated (e.g. where a component word happens also to be a valid word in that language, such as the genus Colon, Circus cyaneus, Hesperia comma, or anything with major or minor on an English-language page) and should not be spell-checked, or be spell-checked with a specialised dictionary (a need identified in this 2003 ietf-languages discussion of language values for taxonomic names).
A further benefit the species microformat would bring is in the enriching and enhancement of species checklists, which are commonly found on the web. Broadly speaking, a species checklist is a list of taxa, usually for a particular group of similar organisms such as birds or vascular plants, found within a particular geographical region (a country, a region, a county, or a specific site, large or small). A typical example of a species checklist is the Checklist of Beetles of the British Isles which, as the name suggests, lists beetles known to be found within the British Isles. A Google Search for "species checklist" will reveal many other such examples. Species checklists are presented in a broadly consistent manner but are usually unable to be parsed and utilised by computers due to the lack of a common standard for marking them up in HTML. The species microformat would provide that common standard. A fully microformat enabled checklist would be parsable by computers and thus would provide developers with a means by which to aggregate and otherwise make use of this invaluable content beyond the current, rather limited, use of simple online viewing.
A specific example of checklist use might be in enabling biological recording software to parse and aggregate checklists in order to include them in their own species dictionaries. Typically there are waits of many months or even years while humans collate checklist changes manually for inclusion in recording software; automated checklist parsing and aggregation would greatly expedite and increase the efficiencies of this process.
The proposal respects all existing biological taxonomies, and is not intended to change or supplant any of them - it is intended merely to provide webmasters (from personal hobby sites to major academic databases; from news outlets to retail organisations) with a method of either:
- marking-up a taxonomical name (or taxon-common name pair) in such a way that its components can be recognised by computers or
- marking up a common name, so as to associate with it a taxonomical name, in such a way that the latter's components can be recognised by computers.
Embedding within other microformats
The proposed plant microformat (with care regime, supplier, etc.), hListing draft, recipe or hReview 0.4 (in progress) (and possibly others) could contain a scientific name microformat, in the same way that an hCalendar 1.0 can contain an hCard 1.0.
See also: species-brainstorming#Future development
- Wikipedia: Scientific classification
- Wikipedia: Nomenclature Codes
- http://www.iczn.org/ International Commission on Zoological Nomenclature (ICZN)
- International Code of Botanical Nomenclature (ICBN)
- International Committee on Systematics of Prokaryotes (ICSP)
- International Committee on Taxonomy of Viruses
- RHS Plant Finder: The naming of plants
- International Code of Nomenclature for Cultivated Plants
- Taxonomic Databases Working Group
- Hortax - The Names of Garden Plants
- Wiktionary: Taxonomy
- Biodiversity Informatics: Taxonomic names, metadata, and the Semantic Web
- Wikipedia: Virus classification
Contributors & Supporters
- Andy Mabbett (proponent)
- Roger Hyam (interested party?)
- Charles Roper, Sussex Biodiversity Record Centre (proponent)
- Steve McWilliam, rECOrd - The Biodiversity Information System for the Cheshire region (supporter)
- Kieren Pitts, ILRT - Institute for Learning and Research Technology and the Amateur Entomologists' Society (supporter)
- Cyndy Parr, Spire project (interested party)
- Animal Diversity Web,  (interested party)
- Christoph Champ,  (supporter with a background in biochemistry, biophysics, and bioinformatics)
- David Stang,  (interested party)
Here's some work-in-progress:
- quantitative evidence
- brainstorming (includes the straw man- or draft standard)
- Biobar - A customisable Firefox Extension providing a toolbar and content menu options for browsing biological data and databases, which shows what a user-agent could do, with data extracted from a species microformat
Examples in the wild
- Social network for gardeners marking up plant names with microformats Grows on You.
- A "proof-of-concept" example, with binomial and sub-family, but no other ranks, has been added to the Wikispecies entry for Glaucidium sanchezi; and to its subfamily, Surniinae. See Wikispecies:Microformat for related discussion.
- The current "straw man" for the Species microformat has been deployed, in part, on Wikipedia. All Wikipedia articles with "taxoboxes" (information panels on living things; and there are 37,140 as at the time of posting) now emit a species microformat. For example Southern_Tamandua (a species) and Anteater (a family of species).
- A West Midland Bird Club test page is available.
- Operator has a user-script for parsing Species.
- Taxon Checker - a software tool which, given a common name, searches for the relevant taxonomic data and outputs the selected species' details as (among other options) an HTML fragment. It is intended to provide templates for outputting such fragments with "species" microformat markup, once this proposal is implemented.
- Wikpedia's Beastie Bot can be used to update the "taxoboxes" of articles about living things/